TCGA_ID Days_Death Days_Followup tumor.grade tumor.stage Tumor_Stage Platinum-Based_Chemotherapy Sample_Volume_(cc) Slide_Percent_Tumor_Cells Slide_Percent_Tumor_Nuclei Portion_Weight_(mg) Analyte_DNA_Concentration_(ug/mL) Aliquot_DNA_Concentration_(ug/mL) 6p+12p.Affymetrix.LUAD.coeff 6p+12p_Affymetrix_LUAD_(Coeff.) 6p+12p.Affymetrix.LUAD.corr 6p+12p_Affymetrix_LUAD_(Corr.) 6p+12p.Agilent.OV.corr 6p+12p_Agilent_OV_(Corr.) 6p+12p_Agilent_OV/Stage TNF HLA-DQB1 MAPK14 MIR200C MIR141 RAD51AP1 KRAS ASUN TCGA-05-4244 Null 0 Null IV II-IV Null 0.297 65 80 133 0.14 0.14 Null Null Null Null -0.033647618 Low Low/II-IV 24.4349 3273.9332 1786.8924 8764.862652 1646.657458 197.574 1962.1258 515.2282 TCGA-05-4249 Null 1158 Null IB I Null 0.448 80 80 111 0.15 0.15 -0.552238944 Low -0.590086734 Low -0.44724323 Low Low/I 221.5062 10347.0452 2036.6982 6419.264085 873.991264 54.4107 4618.1473 280.1024 TCGA-05-4250 121 Null Null IIIA II-IV Null 0.252 84.5 85 126 0.15 0.15 0.297056371 Low 0.252080703 Low 0.216643872 Low Low/II-IV 16.9112 3399.1544 1916.9361 3495.637027 1594.265567 214.2087 4723.2032 1574.7327 TCGA-05-4382 Null 607 Null IB I Null 0.216 Null 70 122 0.14 0.14 -0.032606928 Low -0.058963492 Low -0.023973374 Low Low/I 46.6643 12579.9799 1597.1159 9164.861755 1996.683475 209.3911 1599.7483 655.4541 TCGA-05-4384 Null 426 Null IIIA II-IV Yes 0.256 72.5 70 113 0.15 0.15 0.011500769 Low 0.018642711 Low 0.028862248 Low Low/II-IV 75.1374 621.2584 1622.4801 9166.375784 1408.158987 73.9157 1329.2608 378.7416 TCGA-05-4389 Null 1369 Null IA I Null 0.351 82 75 142 0.14 0.14 0.059005759 Low 0.053254497 Low 0.264308083 Low Low/I 80.8725 5426.5101 2150 19556.9299 2775.002621 223.8255 1361.0738 620.8054 TCGA-05-4390 Null 1126 Null IB I Yes 0.486 65 75 131 0.14 0.14 -0.108385076 Low -0.123867664 Low -0.070123983 Low Low/I 10.2187 1447.8684 1855.9796 9126.890228 1016.014992 218.4257 2207.8876 419.6072 TCGA-05-4395 0 Null Null IIIB II-IV Null 0.16 95 77.5 134 0.14 0.14 0.860901065 High 0.725552126 High 0.709289565 High High/II-IV 7.2479 2318.2461 1379.7806 30142.5598 5614.488923 494.1977 3050.2815 2043.9006 TCGA-05-4396 303 Null Null IIIB II-IV Null 0.72 Null Null 37 0.16 0.16 0.003396333 Low 0.031468434 Low -0.010425438 Low Low/II-IV 21.9864 2355.5724 1698.2563 21454.24368 3699.014751 72.0243 3103.1084 303.26 TCGA-05-4397 731 Null Null IIB II-IV Null 0.405 Null 75 117 0.14 0.14 -0.316189711 Low -0.323134933 Low -0.234755044 Low Low/II-IV 12.5897 1811.8167 1827.4986 8397.16321 3055.454322 363.556 950.4141 390.5025 TCGA-05-4398 Null 1431 Null IIIB II-IV Yes 0.54 Null 72.5 141 0.15 0.15 0.147564573 Low 0.090673032 Low 0.097325936 Low Low/II-IV 146.368 4325.1414 1760.3306 18004.07786 5290.214197 510.4393 1223.5755 490.4306 TCGA-05-4402 244 Null Null IV II-IV Yes 0.192 Null 70 123 0.14 0.14 0.137367939 Low 0.148659742 Low 0.120265045 Low Low/II-IV 35.4666 3371.0115 2506.5444 13894.0573 2793.222206 187.9486 1464.7446 489.2937 TCGA-05-4403 Null 578 Null IB I Null 0.6 80 70 114 0.15 0.15 -0.027533431 Low -0.045765971 Low -0.003665204 Low Low/I 20.8507 1122.8802 1927.1615 5945.506285 2490.137012 82.0128 1346.3998 395.8855 TCGA-05-4405 Null 610 Null IB I Null 0.189 Null Null 36 0.17 0.17 -0.422194474 Low -0.423613811 Low -0.365624836 Low Low/I 18.5537 4098.3742 1875.909 5943.422409 755.633108 60.9621 1144.3642 329.3277 TCGA-05-4410 Null 0 Null IB I Null 0.32 Null Null 27 0.16 0.16 -0.121399113 Low -0.157163517 Low -0.038226891 Low Low/I 37.4618 12120.7951 1576.4526 5619.052416 1306.640301 118.5015 1186.5443 425.0765 TCGA-05-4415 91 Null Null IIIB II-IV Null 0.44 Null Null 33 0.14 0.14 0.576125669 High 0.549412668 High 0.501172725 High High/II-IV 6.2222 497.7778 1450.6667 737.506276 132.5907 259.5556 3100.4444 1503.5556 TCGA-05-4417 Null 455 Null IB I Null 0.336 Null Null 35 0.16 0.16 0.222262035 Low 0.227109989 Low 0.129237195 Low Low/I 34.3104 10517.4205 1356.5331 13039.19809 2643.897321 192.5197 3154.0189 541.3425 TCGA-05-4418 274 Null Null IIIA II-IV Null 0.48 Null 70 115 0.15 0.15 0.180459811 Low 0.206808224 Low 0.146996424 Low Low/II-IV 25.9244 5405.5671 1956.9589 26791.66337 4832.723838 330.3698 1347.071 756.7927 TCGA-05-4420 Null 912 Null IB I Null 0.192 82.5 77.5 124 0.16 0.16 -0.401740067 Low -0.455733623 Low -0.378161507 Low Low/I 16.3029 402.8399 2999.2111 29648.21617 4062.757588 498.5538 1457.0076 529.5819 TCGA-05-4422 Null 365 Null IB I Null 0.48 89 70 123 0.15 0.15 -0.019938318 Low -0.052000795 Low 0.02204634 Low Low/I 27.7017 6926.3318 1622.2222 22499.78582 4285.124958 182.9528 1385.6925 392.3896 TCGA-05-4424 Null 913 Null IIB II-IV Null 0.352 Null Null 29 0.14 0.14 -0.00766659 Low -0.038821127 Low -0.092522977 Low Low/II-IV 34.795 10459.0086 1126.3108 10374.67913 925.372035 279.7903 2608.6749 621.0677 TCGA-05-4425 Null 669 Null IV II-IV Yes 0.33 67.5 70 131 0.15 0.15 -0.3472683 Low -0.333259384 Low -0.270105666 Low Low/II-IV 31.3374 16337.437 2035.2546 4536.031695 579.826963 116.3962 1855.624 533.296 TCGA-05-4426 Null 791 Null IB I Null 0.675 89 75 133 0.14 0.14 -0.120577219 Low -0.119647129 Low -0.106833587 Low Low/I 26.0837 5791.7747 2255.3538 9557.639638 2207.652087 140.4965 559.3183 520.1927 TCGA-05-4427 Null 791 Null IIB II-IV Yes 0.306 Null Null 34 0.17 0.17 -0.127037611 Low -0.097088502 Low -0.106583469 Low Low/II-IV 15.6408 2630.6761 2709.3845 5829.17108 1485.69994 162.9667 2921.7962 411.2008 TCGA-05-4430 Null 761 Null IB I Null 0.288 70 75 125 0.15 0.15 -0.214135121 Low -0.226327037 Low -0.141881109 Low Low/I 54.2265 16618.1818 3925.0399 6259.097604 1250.206351 114.8325 1844.0191 586.6029 TCGA-05-4432 Null 761 Null IIB II-IV Yes 0.21 85 75 158 0.14 0.14 -0.195348222 Low -0.20455401 Low -0.169187563 Low Low/II-IV 56.8215 5521.7768 1284.6842 4498.055173 1388.445116 152.5815 1405.8264 466.109 TCGA-05-4433 Null 730 Null IB I Null 0.33 Null Null 40 0.16 0.16 0.155241007 Low 0.134526626 Low 0.14340062 Low Low/I 43.8017 4802.4793 1857.8512 19374.20162 3256.912972 138.0165 3184.2975 445.4545 TCGA-05-4434 457 Null Null IV II-IV Null 0.312 64 72.5 122 0.15 0.15 0.029490318 Low 0.012111572 Low 0.041377244 Low Low/II-IV 52.227 10745.4217 1657.6984 4514.230112 1279.233573 368.7542 1373.2761 548.4965 TCGA-05-5420 Null 31 Null IIIA II-IV Null 0.27 75 55 127 0.13 0.13 0.099520056 Low 0.096820481 Low 0.109362119 Low Low/II-IV 130.6733 4586.0967 2371.8104 Null Null 456.4616 1602.0908 919.1884 TCGA-05-5423 Null 151 Null IIB II-IV Null 0.336 95 75 141 0.13 0.13 -0.011885371 Low 0.051838545 Low -0.031441399 Low Low/II-IV 65.9341 5650.5495 2123.8095 10396.44903 1311.168913 209.5238 1237.3626 427.1062 TCGA-05-5425 Null 90 Null IIB II-IV Yes 0.432 75 60 99 0.17 0.17 Null Null Null Null -0.269323152 Low Low/II-IV 28.8462 3356.9005 3292.9864 15133.00239 1895.806753 372.1719 1044.1176 1080.8824 TCGA-05-5428 Null 0 Null IIA II-IV Yes 0.16 75 80 142 0.13 0.13 0.009423223 Low 0.019630381 Low -0.154678426 Low Low/II-IV 60.17 611.2928 2725.0927 18345.85518 1787.029539 773.4903 1427.5125 892.0863 TCGA-05-5429 Null 30 Null IIIA II-IV Null 0.27 95 80 109 0.17 0.17 -0.065117252 Low -0.070954036 Low -0.035712363 Low Low/II-IV 58.778 1664.3465 1668.9869 12550.94091 1540.449079 358.082 1105.1817 736.2722 TCGA-05-5715 Null 62 Null IB I Null 0.324 88.5 72.5 62 0.15 0.15 0.012778856 Low 0.025042326 Low 0.021498247 Low Low/I 3.1232 1067.3434 1438.2198 10643.79395 1609.347626 130.3923 1683.3886 363.0685 TCGA-35-3615 Null 14 Null IB I Null 0.18 62.5 80 160 0.15 0.15 -0.472824405 Low -0.532199223 Low -0.411827304 Low Low/I 34.1131 1324.2365 2104.2885 4987.201086 5520.535306 71.1501 1214.425 723.1969 TCGA-35-4122 Null 225 Null IA I Null 0.35 82 75 120 0.15 0.15 0.066060855 Low 0.018018605 Low 0.082595758 Low Low/I 149.7487 1972.8643 2387.9397 3812.802974 1684.274801 1133.1658 1498.4925 956.7839 TCGA-35-4123 Null 182 Null IA I Null 0.108 75 72.5 124 0.16 0.16 0.048920404 Low 0.029778892 Low 0.084909824 Low Low/I 131.7326 5931.4815 1894.3153 13311.34087 2142.075825 516.831 1309.4224 823.329 TCGA-35-5375 Null 264 Null IIIA II-IV Null 0.39 93.5 72.5 129 0.16 0.16 -0.343972165 Low -0.333237767 Low -0.271772509 Low Low/II-IV 7.7691 2304.1065 1884.5727 18181.3726 1319.272945 1068.8124 674.8058 1015.5383 TCGA-38-4625 Null 2973 Null IB I Null 0.21 82.5 80 135 0.15 0.15 -0.007696952 Low -0.039856383 Low 0.051184662 Low Low/I 128.9778 2360.7435 1940.0169 7455.779368 1177.603044 722.895 1265.2774 1520.98 TCGA-38-4627 1147 Null Null IIA II-IV Null 0.294 55 70 124 0.15 0.15 -0.071720061 Low -0.077210625 Low -0.003078659 Low Low/II-IV 5.4725 1604.1591 2016.7822 5742.445223 873.07567 99.2339 1161.9847 425.3922 TCGA-38-4628 1492 Null Null IIB II-IV Yes 0.08 82 75 94 0.13 0.13 -0.03869851 Low -0.078968151 Low 0.007828937 Low Low/II-IV 12.9583 7035.3982 2013.5904 8720.075493 1931.05233 316.3717 1195.3224 313.2111 TCGA-38-4629 864 Null Null IIB II-IV Null 0.26 75 70 62 0.14 0.14 0.005567035 Low 0.000153561 Low 0.022207684 Low Low/II-IV 9.9758 15434.0992 1649.3349 Null Null 290.2056 808.948 629.6856 TCGA-38-4630 1073 Null Null IB I Null 0.384 80 80 133 0.15 0.15 -0.284058421 Low -0.294617516 Low -0.404271106 Low Low/I 385.996 2132.7277 1328.6062 Null Null 631.0658 1337.248 451.1411 TCGA-38-4631 354 Null Null IB I Null 0.112 83.5 80 109 0.15 0.15 0.278326644 Low 0.286901752 Low 0.297808486 Low Low/I 36.0989 4021.8869 1257.9678 7906.093454 1040.20018 285.6521 1565.5931 769.0633 TCGA-38-4632 1357 Null Null IV II-IV Yes 0.168 81.5 70 137 0.15 0.15 0.25183515 Low 0.213379311 Low 0.249464475 Low Low/II-IV 54.2917 4838.0807 1740.3938 8427.745536 880.581707 711.1451 863.3149 497.8016 TCGA-38-6178 Null 158 Null IIIA II-IV Yes 0.27 Null Null 35 0.14 0.14 -0.490831502 Low -0.519262572 Low -0.498273332 Low Low/II-IV 6.2402 6218.4087 2179.4072 7270.52253 687.884423 96.7239 1176.2871 439.1576 TCGA-38-7271 800 Null Null IA I Yes 0.44 Null Null 15 0.15 0.15 -0.092866641 Low -0.078606566 Low -0.088729016 Low Low/I 24.2976 5363.7054 1774.4875 3229.909177 535.199018 70.615 1242.2172 386.4844 TCGA-38-A44F Null 133 Null IB I Null Null Null Null 30 0.16 0.16 0.237366143 Low 0.231335504 Low 0.223840631 Low Low/I 79.9087 2704.3379 1301.3699 9139.061486 1846.120565 91.895 1116.4384 578.1963 TCGA-44-2655 Null 575 Null IA I Null 0.075 37.5 40 113 0.15 0.15 -0.320889865 Low -0.312691407 Low -0.257553689 Low Low/I 35.9964 1464.7158 1641.3311 Null Null 31.335 858.9926 296.7759 TCGA-44-2656 Null 582 Null IB I Null 0.256 85 80 113 0.14 0.14 -0.252651113 Low -0.276411762 Low -0.201842423 Low Low/I 11.6516 4333.294 1515.2439 3053.532154 827.161547 105.6769 1094.1622 579.0551 TCGA-44-2657 Null 400 Null IB I Null 0.18 84 72.5 117 0.15 0.15 0.087920783 Low 0.100815323 Low 0.097660452 Low Low/I 76.5101 21712.0805 1655.0336 Null Null 123.4899 1607.3826 1091.2752 TCGA-44-2659 Null 529 Null IIB II-IV Yes 0.312 62.5 67.5 105 0.15 0.15 -0.348487395 Low -0.39805307 Low -0.293446019 Low Low/II-IV 72.2458 9193.8542 2373.3246 5131.438379 2068.39784 73.5534 1232.7558 393.5927 TCGA-44-2661 Null 103 Null IA I Null 0.42 91.5 72.5 157 0.15 0.15 -0.199643586 Low -0.171846396 Low -0.13032391 Low Low/I 109.5101 42087.8963 2032.6609 Null Null 135.927 989.9135 323.7272 TCGA-44-2662 Null 480 Null IB I Yes 0.18 78.5 80 104 0.14 0.14 -0.015684891 Low -0.018565078 Low 0.003278356 Low Low/I 18.314 2956.8184 1929.078 3617.778632 1338.840041 322.1115 1164.557 758.0573 TCGA-44-2665 Null 400 Null IIB II-IV Yes 0.198 80 81.5 135 0.15 0.15 0.047448529 Low 0.009859583 Low 0.112238501 Low Low/II-IV 41.7457 2061.1954 1755.2182 Null Null 119.5446 1222.0114 490.038 TCGA-44-2666 97 97 Null IB I Null 0.7 89 87.5 143 0.15 0.15 -0.538435785 Low -0.579846723 Low -0.440294657 Low Low/I 8.7582 3556.6677 1907.2047 3725.587153 1301.43377 48.7957 758.6279 320.7173 TCGA-44-2668 Null 246 Null IB I Null 0.36 75 77.5 173 0.14 0.14 0.216715561 Low 0.214702552 Low 0.200624103 Low Low/I 1488.3657 4814.1931 1857.3866 Null Null 352.3712 1806.073 738.8605 TCGA-44-3396 Null 311 Null IIIA II-IV Yes 0.52 77.5 67.5 108 0.15 0.15 -0.275424872 Low -0.29972003 Low -0.214140274 Low Low/II-IV 415.3054 10273.8868 2158.4247 Null Null 159.991 874.6923 241.6648 TCGA-44-3398 Null 253 Null IA I Null 0.765 57.5 75 137 0.14 0.14 -0.012857887 Low -0.016389754 Low 0.024535586 Low Low/I 111.349 5919.4861 2313.0621 Null Null 158.4582 1836.4026 545.182 TCGA-44-3917 Null 392 Null IB I Null 0.144 95.5 80 107 0.15 0.15 -0.107132617 Low -0.128775173 Low -0.150485297 Low Low/I Null Null Null Null Null Null Null Null TCGA-44-3918 Null 197 Null IA I Yes 1.28 90 75 125 0.16 0.16 -0.229865657 Low -0.257044602 Low -0.21635764 Low Low/I 137.2998 17338.2914 2469.1076 3672.950083 731.093131 186.1175 1260.4882 381.0069 TCGA-44-3919 Null 190 Null IA I Null 0.072 100 80 94 0.15 0.15 -0.086556344 Low -0.120101427 Low -0.037757477 Low Low/I 107.6423 14239.3496 2045.2033 10152.42453 2839.181048 164.878 1337.8862 382.7642 TCGA-44-4112 Null 141 Null IB I Yes 0.8 57.5 80 153 0.15 0.15 -0.02158049 Low 0.001203269 Low -0.000646131 Low Low/I 16.4659 1467.0683 2271.4859 11287.62214 1778.601659 189.9598 1902.008 328.9157 TCGA-44-5643 Null 106 Null IIIA II-IV Yes 0.768 78.5 75 62 0.15 0.15 0.764715267 High 0.735488414 High 0.70812029 High High/II-IV 15.2113 1599.4366 861.9718 57575.50807 6458.060419 1324.507 5670.4225 2714.9296 TCGA-44-5644 Null 498 Null IB I Null 0.2 Null Null 40 0.16 0.16 0.437750513 High 0.425825149 High 0.395670143 High High/I 22.6101 444.2228 1166.4173 13023.53243 1981.133501 393.0175 1760.931 566.5835 TCGA-44-5645 Null 208 Null IA I Null 0.312 72.5 67.5 61 0.16 0.16 0.046561589 Low 0.096290488 Low 0.019996653 Low Low/I 113.0235 16893.8612 1576.5921 6875.652875 941.322096 76.3052 1051.0614 334.4808 TCGA-44-6144 Null 9 Null IA I Null 0.216 Null Null 28 0.16 0.16 -0.232986864 Low -0.19928374 Low -0.213764296 Low Low/I Null Null Null Null Null Null Null Null TCGA-44-6145 Null 103 Null IA I Null 0.75 Null Null 36 0.15 0.15 0.043460676 Low 0.058528648 Low 0.034256685 Low Low/I 15.1611 3468.0985 2056.8541 15048.03565 1210.541316 228.048 1519.8989 476.9425 TCGA-44-6146 Null 302 Null IIB II-IV Yes 1.28 Null Null 34 0.16 0.16 -0.043387383 Low -0.052925045 Low -0.020054032 Low Low/II-IV 2.7076 166.065 1921.4801 Null Null 47.8339 2511.2816 317.2383 TCGA-44-6147 Null 236 Null IA I Null 0.48 Null Null 35 0.17 0.17 -0.540319784 Low -0.537425458 Low -0.48136962 Low Low/I 12.5683 6989.6175 1593.9891 Null Null 68.8525 1174.3169 291.2568 TCGA-44-6148 Null 96 Null IA I Null 0.48 Null Null 36 0.16 0.16 -0.016861478 Low -0.017139424 Low -0.007419263 Low Low/I 6.4283 5406.1872 1653.1405 16907.8671 911.927283 38.5697 625.1507 323.557 TCGA-44-6774 Null 166 Null IIIA II-IV Yes 0.45 Null Null 37 0.17 0.17 -0.362658452 Low -0.382055157 Low -0.408496122 Low Low/II-IV 52.0446 1383.829 1931.2268 3630.136098 317.269981 123.6059 1122.6766 384.7584 TCGA-44-6775 Null 83 Null IB I Null 0.242 Null Null 38 0.16 0.16 -0.129074863 Low -0.138162978 Low -0.102755106 Low Low/I 14.6391 7729.4296 1753.6598 Null Null 168.6017 1046.4412 327.6123 TCGA-44-6776 Null 1938 Null IA I Null 0.525 Null Null 40 0.15 0.15 -0.393658252 Low -0.453603181 Low -0.513351194 Low Low/I 2.1552 3514.3678 1617.0977 Null Null 36.6379 2285.2011 436.7816 TCGA-44-6777 987 Null Null IB I Null 0.72 Null Null 28 0.15 0.15 -0.072916132 Low -0.074383687 Low -0.065922495 Low Low/I 92.0568 16688.0589 1690.6891 Null Null 91.5308 1355.0763 480.7996 TCGA-44-6778 Null 1110 Null IA I Null 0.72 Null Null 29 0.15 0.15 -0.447653219 Low -0.338058569 Low -0.368496321 Low Low/I 50.7614 14468.2741 1424.4924 Null Null 260.1523 1445.4315 412.4365 TCGA-44-6779 500 Null Null IIB II-IV Yes 0.35 Null Null 27 0.15 0.15 0.166730115 Low 0.125899346 Low 0.101163159 Low Low/II-IV 5.5788 2723.2516 1854.5527 11202.10244 1980.68518 274.1582 1330.1454 518.8285 TCGA-44-7659 Null 299 Null IA I Null 0.384 Null Null 27 0.15 0.15 0.015214833 Low 0.063992433 Low -0.000164941 Low Low/I 23.9163 639.7608 1286.2481 Null Null 64.275 1275.7848 284.006 TCGA-44-7660 Null 162 Null IB I Null 0.49 Null Null 28 0.14 0.14 0.141585409 Low 0.130272157 Low 0.118852483 Low Low/I 17.6638 4023.1311 866.3653 Null Null 381.0325 1629.6919 839.0285 TCGA-44-7661 Null 153 Null IB I Null 0.784 Null Null 38 0.15 0.15 0.073451344 Low 0.063780524 Low 0.025568887 Low Low/I 21.2367 6153.3417 1852.5921 Null Null 279.2005 3418.4884 1386.9457 TCGA-44-7662 Null 50 Null IB I Null 0.21 Null Null 31 0.14 0.14 -0.294165414 Low -0.298689263 Low -0.233423562 Low Low/I 21.9016 739.9186 1734.3692 Null Null 282.6489 1223.8254 490.1221 TCGA-44-7667 Null 557 Null IIB II-IV Null 0.68 Null Null 23 0.16 0.16 0.006888953 Low -0.016820601 Low -0.072024834 Low Low/II-IV 19.6433 423.1642 1418.9816 Null Null 766.0903 1991.9679 584.6391 TCGA-44-7669 574 Null Null IIA II-IV Yes 1.134 Null Null 36 0.14 0.14 0.554092712 High 0.545320464 High 0.401566429 High High/II-IV 20.2412 1457.6736 956.8571 Null Null 1338.3732 2985.5781 690.3479 TCGA-44-7670 Null 531 Null IIA II-IV Yes 0.84 Null Null 27 0.15 0.15 -0.568866407 Low -0.570945176 Low -0.437117858 Low Low/II-IV 48.2263 4807.4813 2422.4438 Null Null 600.9738 7593.7862 661.5658 TCGA-44-7671 Null 535 Null IB I Null 0.18 Null Null 22 0.13 0.13 -0.612817418 Low -0.675023232 Low -0.596662574 Low Low/I 2.2056 1934.6199 1936.8255 Null Null 40.961 1598.7397 358.2513 TCGA-44-7672 Null 418 Null IA I Null 1.08 Null Null 22 0.13 0.13 0.390331847 High 0.302251868 Low 0.2091247 Low Low/I 44.5139 6272.5498 1297.54 Null Null 205.3885 2636.0797 383.8344 TCGA-44-8117 Null 259 Null IB I Yes 0.308 Null Null 40 0.16 0.16 -0.394462783 Low -0.366033131 Low -0.426746133 Low Low/I 5.4921 5168.666 1638.9652 6001.181946 987.628791 78.9131 2120.8267 334.1523 TCGA-44-8119 Null 99 Null IIB II-IV Null 2.6 Null Null 32 0.16 0.16 0.182986965 Low 0.188197414 Low 0.174566893 Low Low/II-IV 14.9931 1627.4084 1543.2367 6671.249218 1408.720138 397.7116 1810.482 296.1794 TCGA-44-8120 Null 169 Null IB I Null 0.36 Null Null 21 0.15 0.15 -0.495696781 Low -0.525429064 Low 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0.153801904 Low 0.148516498 Low 0.101915355 Low Low/I 84.7826 7424.4565 1945.6522 8600.346042 1764.012099 644.5652 1295.6522 890.7609 TCGA-50-6591 119 Null Null IV II-IV Null 0.504 Null Null 25 0.14 0.14 -0.66868622 Low -0.753478665 Low -0.689281372 Low Low/II-IV 3.5842 385.3047 2235.9618 3469.104551 397.785882 193.5484 1225.8065 546.595 TCGA-50-6592 777 Null Null IB I Null 0.6 Null Null 33 0.13 0.13 0.316660635 Low 0.3399096 Low 0.394291261 High High/I 24.4042 1510.9171 2854.4303 16463.6604 1467.823499 468.8167 2374.0537 942.343 TCGA-50-6593 336 Null Null IIIA II-IV Null 0.42 Null Null 37 0.13 0.13 -0.284595185 Low -0.330215991 Low -0.235099036 Low Low/II-IV 29.5061 13822.9634 1458.6273 7604.856194 448.503015 126.3631 1032.0718 357.2803 TCGA-50-6594 370 Null Null IIIA II-IV Null 0.45 Null Null 35 0.13 0.13 -0.389031511 Low -0.47637005 Low -0.45214433 Low Low/II-IV 28.169 1482.3944 1053.5211 5745.813571 854.816679 205.6338 1002.8169 369.0141 TCGA-50-6595 189 Null Null IIIA II-IV Yes 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Null Null 33 0.17 0.17 0.211138932 Low 0.199564416 Low 0.183775336 Low Low/II-IV 26.2964 7803.8846 1282.3705 6638.470649 1428.526487 63.7828 1386.9967 393.8869 TCGA-50-8460 Null 105 Null IA I Null 0.351 Null Null 31 0.16 0.16 0.035469853 Low 0.010296131 Low 0.03108103 Low Low/I 26.6419 12693.3086 1151.1772 16209.17111 1463.301206 79.9257 709.4176 374.2255 TCGA-53-7624 1043 Null Null IV II-IV Yes Null Null Null 37 0.16 0.16 -0.299995528 Low -0.330313262 Low -0.264219177 Low Low/II-IV 84.7606 1344.7519 2246.816 10089.38814 1940.801835 703.5573 1593.7637 543.2587 TCGA-53-7626 929 Null Null IIA II-IV Yes Null Null Null 26 0.15 0.15 0.342972058 Low 0.338388702 Low 0.212362851 Low Low/II-IV 42.3963 19072.9295 1242.0125 5799.275647 1365.273953 139.4241 1898.4438 382.9894 TCGA-53-7813 Null 418 Null IIIB II-IV Yes 0.192 Null Null 32 0.15 0.15 -0.113727016 Low -0.106540872 Low -0.104103716 Low Low/II-IV 40.0822 2682.4255 1358.6845 13389.20532 1646.474599 199.3834 2160.3289 630.0103 TCGA-53-A4EZ 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TCGA-55-6970 464 Null Null IIIA II-IV Yes 0.352 Null Null 40 0.17 0.17 -0.523861024 Low -0.521070194 Low -0.500860482 Low Low/II-IV 8.9945 2599.1005 2297.4623 13875.48844 2353.903568 183.1031 1553.1642 694.1857 TCGA-55-6971 Null 25 Null IB I Null 0.11 Null Null 42 0.16 0.16 0.361897259 High 0.367876923 High 0.296752441 Low Low/I 37.7541 9176.1859 1303.001 10348.87173 2275.925255 133.5915 1677.6379 377.5411 TCGA-55-6972 Null 1475 Null IB I Null 0.048 Null Null 37 0.16 0.16 -0.078653253 Low -0.098048741 Low -0.291753428 Low Low/I 2.2831 71.9178 1674.6575 38892.23637 8277.868968 85.6164 1234.0183 428.0822 TCGA-55-6978 176 Null Null IIA II-IV Null 0.084 Null Null 40 0.16 0.16 0.074561784 Low 0.075721029 Low 0.049663513 Low Low/II-IV 22.3358 2887.0852 1815.326 5357.426667 1327.386416 405.2871 2068.5854 543.2648 TCGA-55-6979 237 Null Null IIB II-IV Yes 0.28 Null Null 40 0.17 0.17 -0.203622561 Low -0.197293405 Low -0.170102923 Low Low/II-IV 39.4627 8077.1779 1518.6109 5007.57383 668.291417 273.4204 1025.3266 419.9963 TCGA-55-6980 Null 67 Null IA I Null 0.021 Null Null 27 0.17 0.17 0.165610503 Low 0.181516476 Low 0.119297658 Low Low/I 269.6729 7919.5402 1881.5208 10627.6252 1479.100356 34.4828 1456.2334 381.0787 TCGA-55-6981 1379 Null Null IIIA II-IV Null 0.192 Null Null 30 0.16 0.16 0.310413816 Low 0.261985959 Low 0.333132802 Low Low/II-IV 35.9649 13243.8596 1532.4561 11612.97737 1496.345778 206.1404 1708.7719 732.4561 TCGA-55-6982 995 Null Null IIB II-IV Null 0.015 Null Null 35 0.16 0.16 0.011297853 Low 0.055209947 Low -0.007097671 Low Low/II-IV 29.4999 14166.3978 2450.3342 6488.029346 1366.222169 209.2648 2116.6167 573.404 TCGA-55-6983 Null 1826 Null IIB II-IV Null 0.03 Null Null 32 0.16 0.16 0.186383778 Low 0.171646939 Low 0.164323021 Low Low/II-IV 18.0851 6274.4681 1058.8652 7809.379931 2120.487294 85.1064 1581.5603 418.4397 TCGA-55-6984 760 Null Null IIB II-IV Null 0.048 Null Null 16 0.15 0.15 Null Null Null Null 0.359136782 High High/II-IV 54.8446 727.6051 1117.0018 19630.01302 4522.185712 184.6435 2789.7623 613.3455 TCGA-55-6985 Null 1233 Null IB I Null 0.002 Null Null 16 0.14 0.14 0.048587052 Low 0.006738518 Low 0.051075524 Low Low/I 24.6269 8180.597 1677.6119 8604.33899 1947.464123 214.1791 2051.4925 550 TCGA-55-6986 Null 2151 Null IB I Null 0.02 Null Null 20 0.16 0.16 -0.266333077 Low -0.253092334 Low -0.242117725 Low Low/I 13.0814 10564.6802 1613.3721 9614.540499 2065.177756 38.5174 800.1453 509.4477 TCGA-55-6987 Null 1170 Null IA I Null 0.002 Null Null 15 0.15 0.15 0.224895563 Low 0.211962184 Low 0.213624851 Low Low/I 114.7599 13971.3983 1484.8164 9228.100283 1831.87416 239.4068 1413.4887 860.8757 TCGA-55-7227 Null 53 Null IIIA II-IV Yes 0.015 Null Null 13 0.14 0.14 -0.040730336 Low -0.065509581 Low 0.015708023 Low Low/II-IV 60.1244 2921.2163 1966.1368 6008.917997 748.064819 114.029 870.076 344.8514 TCGA-55-7281 Null 18 Null IA I Yes 0.006 Null Null 30 0.15 0.15 0.122390343 Low 0.135605031 Low 0.113304782 Low Low/I 79.2023 6481.4815 1323.0769 6637.34451 847.641187 99.1453 1882.6211 372.6496 TCGA-55-7283 Null 35 Null IIIA II-IV Yes 0.001 Null Null 23 0.15 0.15 -0.471017156 Low -0.392618133 Low -0.307019805 Low Low/II-IV 11.0276 3879.198 1764.411 Null Null 45.614 1856.6416 410.0251 TCGA-55-7284 Null 121 Null IIB II-IV Null 0.135 Null Null 35 0.14 0.14 0.334720844 Low 0.364332989 High 0.448539879 High High/II-IV 10.9083 7161.4234 1842.8713 10512.58058 2238.827985 62.0212 2050.4398 452.5366 TCGA-55-7570 Null 6 Null IA I Null 0.012 Null Null 21 0.17 0.17 -0.056305757 Low -0.083339677 Low -0.023412851 Low Low/I 8.7146 282.3529 1814.3791 Null Null 617.4292 1147.7124 1128.5403 TCGA-55-7573 Null 4 Null IA I Null 0.126 Null Null 28 0.16 0.16 -0.526547602 Low -0.528483421 Low -0.486167796 Low Low/I 127.3018 24511.6093 2047.2378 10822.86753 782.621218 54.4436 911.9295 340.2722 TCGA-55-7574 Null 95 Null IB I Yes 0.252 Null Null 30 0.15 0.15 -0.001565069 Low -0.027392277 Low 0.017555229 Low Low/I 19.8452 2089.3034 1466.9577 Null Null 97.6384 1800.3572 550.903 TCGA-55-7576 Null 40 Null IB I Yes 0.05 Null Null 22 0.15 0.15 0.43730645 High 0.427546418 High 0.498732217 High High/I 8.3092 10165.5358 1809.1995 Null Null 196.4874 2777.9509 1154.7302 TCGA-55-7724 Null 0 Null IB I Null 0.056 Null Null 27 0.14 0.14 0.132655969 Low 0.137395937 Low 0.136849617 Low Low/I 28.0561 2631.2625 1879.7595 Null Null 171.3427 1878.7575 596.1924 TCGA-55-7725 Null 39 Null IA I Null 0.04 Null Null 32 0.14 0.14 -0.069311208 Low -0.054413371 Low -0.048360061 Low Low/I 31.5126 3398.1092 1737.395 Null Null 84.0336 3121.8487 789.916 TCGA-55-7726 Null 39 Null IA I Null 0.036 Null Null 36 0.15 0.15 0.289684801 Low 0.295628241 Low 0.269033818 Low Low/I 46.1402 1200.5324 1818.9885 Null Null 476.4862 2169.4765 943.2121 TCGA-55-7727 Null 34 Null IIIA II-IV Null 0.036 Null Null 29 0.14 0.14 -0.295882952 Low -0.295880336 Low -0.285786206 Low Low/II-IV 55.0459 2453.211 2046.789 11815.42557 1892.300101 144.0367 1215.5963 320.1835 TCGA-55-7728 Null 24 Null IB I Null 0.4 Null Null 37 0.14 0.14 -0.104996713 Low -0.145077774 Low -0.111086518 Low Low/I 51.1206 17016.1141 1130.5797 5086.174295 1031.295388 70.3834 1319.1332 447.4903 TCGA-55-7815 Null 54 Null IB I Null 0.196 Null Null 30 0.14 0.14 0.138592813 Low 0.209835669 Low 0.104742552 Low Low/I 30.0601 1427.8557 1759.519 6842.118058 934.121132 115.2305 3671.3427 759.519 TCGA-55-7903 Null 19 Null IA I Null 0.02 Null Null 24 0.13 0.13 -0.005585553 Low -0.035060908 Low 0.009853772 Low Low/I 28.8989 846.0389 2701.5446 Null Null 218.2362 1403.5874 424.0159 TCGA-55-7907 Null 16 Null IIA II-IV Null 0.009 Null Null 18 0.14 0.14 0.242764654 Low 0.228134383 Low 0.31361603 Low Low/II-IV 5.473 2535.5747 1455.043 11214.35943 1043.364145 183.7373 3030.4926 557.4668 TCGA-55-7910 Null 203 Null IIA II-IV Yes 0.27 Null Null 36 0.13 0.13 -0.005825164 Low 0.064744193 Low 0.054471455 Low Low/II-IV 12.037 1085.1852 1025 Null Null 269.4444 1875 852.7778 TCGA-55-7911 Null 21 Null IA I Null 0.16 Null Null 38 0.15 0.15 0.259299747 Low 0.244872827 Low 0.258961209 Low Low/I 45.9892 1866.5257 1428.8357 Null Null 425.0033 2978.7234 803.4888 TCGA-55-7913 Null 62 Null IA I Null 0.056 Null Null 35 0.17 0.17 0.243089205 Low 0.252606004 Low 0.196302384 Low Low/I 35.5836 2039.4576 1136.6669 12826.7947 3220.3824 344.6445 3263.3618 778.2481 TCGA-55-7914 Null 3 Null IIA II-IV Yes 0.016 Null Null 12 0.14 0.14 -0.359804216 Low -0.390659284 Low -0.49002032 Low Low/II-IV 27.4863 5023.988 3203.3983 Null Null 104.4478 1569.7151 702.1489 TCGA-55-7994 Null 31 Null IIB II-IV Yes 0.32 Null Null 31 0.15 0.15 -0.258063985 Low -0.260608227 Low -0.036719942 Low Low/II-IV 46.2252 8872.0803 2254.2721 12919.70172 1949.995851 420.7763 1249.0314 650.3195 TCGA-55-7995 Null 5 Null IA I Yes 0.112 Null Null 38 0.14 0.14 0.549930181 High 0.587200954 High 0.55954524 High High/I 105.2408 4941.2264 1641.4174 24153.41649 6705.627495 427.1872 1948.6527 702.7371 TCGA-55-8085 Null 33 Null IA I Null 0.105 Null Null 32 0.14 0.14 -0.61502118 Low -0.661192671 Low -0.556948732 Low Low/I 125.261 17421.7119 2296.4509 17859.71136 3377.587939 238.3438 1322.547 550.8003 TCGA-55-8087 Null 21 Null IB I Null 0.504 Null Null 37 0.15 0.15 -0.717655073 Low -0.682825646 Low -0.617138411 Low Low/I 130.192 1570.6806 1652.007 6859.855264 1147.295484 27.5742 827.5742 184.2932 TCGA-55-8090 Null 6 Null IA I Null 0.08 Null Null 38 0.15 0.15 0.31212313 Low 0.314455353 Low 0.301520505 Low Low/I 26.3239 4636.7296 1498.2967 4509.358503 2317.709167 138.7426 6327.9653 328.275 TCGA-55-8091 Null 43 Null IB I Null 0.528 Null Null 36 0.14 0.14 0.478130198 High 0.543394975 High 0.466807749 High High/I 44.2652 13691.4564 1286.6923 4503.618702 1311.166563 96.7833 1245.4281 462.534 TCGA-55-8092 Null 26 Null IIB II-IV Null 0.175 Null Null 35 0.13 0.13 -0.188424189 Low -0.199724518 Low -0.20860757 Low Low/II-IV 17.7945 6945.1874 1814.1477 8490.412323 1737.634005 134.3484 2077.0612 810.0939 TCGA-55-8094 Null 4 Null IV II-IV Null 0.07 Null Null 24 0.15 0.15 0.828098218 High 0.510771042 High 0.51227823 High High/II-IV 3.5762 221.1295 1633.1396 9902.109353 2094.518086 325.4359 9271.3456 605.5729 TCGA-55-8096 Null 47 Null IB I Null 0.324 Null Null 39 0.17 0.17 0.209280484 Low 0.204734282 Low 0.165550911 Low Low/I 34.3034 8816.6091 1896.6687 6711.265638 1082.44433 116.9436 1238.3544 486.7971 TCGA-55-8097 Null 15 Null IA I Null 0.02 Null Null 19 0.17 0.17 -0.197893211 Low -0.17884195 Low -0.241238493 Low Low/I 18.8153 2348.3068 2351.5094 12706.30141 1417.226165 49.24 2616.5246 337.0737 TCGA-55-8203 Null 4 Null IA I Null 0.024 Null Null 32 0.14 0.14 -0.207380761 Low -0.21172173 Low -0.241336097 Low Low/I 91.8006 2976.4432 1548.8828 9490.102494 1726.103836 167.8293 2173.2888 458.5987 TCGA-55-8204 Null 0 Null IB I Null 0.008 Null Null 12 0.15 0.15 0.06208337 Low 0.089023962 Low 0.039714815 Low Low/I 72.4249 1398.0687 1459.2275 6527.245046 1464.118446 250 1063.3047 641.0944 TCGA-55-8205 Null 33 Null IIA II-IV Yes 0.66 Null Null 35 0.15 0.15 -0.237269863 Low -0.260620255 Low -0.156313514 Low Low/II-IV 75.0015 12902.4806 1956.6858 2949.240473 1473.560121 422.7935 1112.0482 630.7092 TCGA-55-8206 Null 46 Null IA I Null 0.36 Null Null 33 0.16 0.16 -0.337774355 Low -0.354097777 Low -0.281722562 Low Low/I 75.6054 8125.2215 2277.3184 9296.291041 1542.331715 61.1341 1008.86 296.8104 TCGA-55-8207 Null 66 Null IB I Null 0.18 Null Null 29 0.16 0.16 -0.451450938 Low -0.480350593 Low -0.39321793 Low Low/I 6.5383 3796.2223 2146.0225 5435.023164 1168.643709 70.8318 1636.0334 257.5372 TCGA-55-8208 Null 0 Null IA I Null 0.252 Null Null 41 0.15 0.15 0.034305448 Low 0.064190814 Low 0.020346054 Low Low/I 154.2032 4849.9226 1843.2182 5232.488526 1222.303373 270.2424 1419.2883 502.3208 TCGA-55-8299 Null 216 Null IA I Null 0.009 Null Null 25 0.17 0.17 -0.071009845 Low -0.082816928 Low -0.063546044 Low Low/I 29.5655 1412.3873 1533.606 4546.481391 783.969875 115.7279 918.6431 468.8247 TCGA-55-8301 Null 44 Null IB I Yes 0.012 Null Null 30 0.17 0.17 0.023240181 Low -0.023800039 Low 0.051465825 Low Low/I 66.2366 12129.8925 1351.828 6064.661713 1169.08934 289.8925 1049.4624 507.0968 TCGA-55-8302 Null 23 Null IB I Null 0.018 Null Null 25 0.17 0.17 Null Null Null Null 0.351161133 High High/I 33.781 5599.8892 1424.3389 5695.347822 1519.872267 269.1402 2174.7196 600.8584 TCGA-55-8505 Null 29 Null IIIA II-IV Yes 0.336 Null Null 30 0.16 0.16 0.122706359 Low 0.110778357 Low 0.109839163 Low Low/II-IV 73.0701 506.1874 1847.3777 12414.17392 1331.366476 215.0854 1808.4856 497.3483 TCGA-55-8506 Null 11 Null IIB II-IV Null 0.308 Null Null 43 0.15 0.15 0.304054564 Low 0.319760774 Low 0.327624261 Low Low/II-IV 8.4459 3766.8919 1297.2973 16320.21443 3433.472329 170.045 972.4099 425.1126 TCGA-55-8507 Null 8 Null IA I Null 0.28 Null Null 43 0.16 0.16 -0.163251889 Low -0.196606448 Low -0.084588668 Low Low/I 165.5844 7110.9307 1603.8961 11215.49195 1331.097741 139.0693 2574.6753 503.2468 TCGA-55-8508 Null 15 Null IIA II-IV Yes 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IB I Null 0.06 Null Null 41 0.15 0.15 -0.534035423 Low -0.534735103 Low -0.478251395 Low Low/I 17.4194 19335.4839 1045.1613 8911.227197 2194.126829 32.9032 983.871 252.9032 TCGA-55-8614 Null 41 Null IB I Null 0.084 Null Null 42 0.15 0.15 -0.494970158 Low -0.511484574 Low -0.43448749 Low Low/I 35.2035 3260.7261 2279.4279 7650.279589 704.896132 195.5053 858.0858 423.6995 TCGA-55-8615 Null 15 Null IIIA II-IV Yes 0.486 Null Null 38 0.15 0.15 0.011084831 Low -0.00669059 Low 0.031602073 Low Low/II-IV 29.9465 457.754 1594.6524 18120.0635 2666.048618 96.7914 1955.0802 383.9572 TCGA-55-8616 Null 48 Null IB I Null 0.04 Null Null 32 0.14 0.14 -0.150187533 Low -0.144884171 Low -0.125712449 Low Low/I 2.6261 2870.7983 1664.3908 11444.63792 1583.421978 69.8529 2340.8613 395.4832 TCGA-55-8619 Null 49 Null IIB II-IV Null 0.576 Null Null 40 0.15 0.15 -0.132476981 Low -0.116825805 Low -0.105534986 Low Low/II-IV 67.5597 4358.7653 1301.689 5936.604116 810.249194 49.505 1004.0769 237.6238 TCGA-55-8620 Null 66 Null IV II-IV Null 0.4 Null Null 40 0.14 0.14 -0.298981667 Low -0.26902593 Low -0.267165855 Low Low/II-IV 42.2682 1208.5132 1323.4112 5570.844117 762.990087 332.1923 1276.9757 448.8763 TCGA-55-8621 Null 106 Null IA I Null 0.252 Null Null 31 0.15 0.15 0.078151996 Low 0.11253665 Low 0.074366266 Low Low/I 88.9246 5821.3473 1301.7276 5452.082494 745.11113 93.7458 1102.9865 329.9853 TCGA-55-A48X Null 33 Null IIA II-IV Yes Null Null Null 30 0.15 0.15 -0.285000324 Low -0.250813067 Low -0.250640965 Low Low/II-IV 27.8592 4726.784 1699.9022 7949.440089 1159.52662 92.8641 1237.5367 283.9687 TCGA-55-A48Y Null 42 Null IIA II-IV Yes Null Null Null 10 0.15 0.15 -0.115463449 Low -0.128963229 Low -0.130891183 Low Low/II-IV 34.6639 1292.0168 1680.1471 16127.53465 2546.529198 131.3025 1355.042 589.2857 TCGA-55-A48Z Null 29 Null IIIB II-IV Yes Null Null Null 20 0.15 0.15 -0.379876129 Low -0.348806434 Low -0.338546838 Low Low/II-IV 28.3518 27144.1615 1233.061 4035.485412 661.966904 141.2782 970.6872 292.6478 TCGA-55-A490 Null 48 Null IIA II-IV Yes Null Null Null 10 0.16 0.16 0.148003986 Low 0.191653675 Low 0.118945123 Low Low/II-IV 25.0927 2275.5619 1412.0784 8583.974744 1240.510224 94.4666 2501.8881 308.0004 TCGA-55-A491 Null 0 Null IA I Null Null Null Null 10 0.16 0.16 -0.273451164 Low -0.200557904 Low -0.286014416 Low Low/I 43.9386 12089.4653 1714.1345 7443.012662 1269.550864 112.7581 1096.8767 355.7438 TCGA-55-A492 Null 1 Null IA I Null Null Null Null 30 0.15 0.15 0.04178622 Low 0.072293779 Low 0.036074237 Low Low/I 21.4247 1333.1548 997.3219 14727.76832 2878.732116 25.7097 1092.1264 400.6427 TCGA-55-A493 Null 28 Null IB I Null Null Null Null 30 0.16 0.16 0.409890543 High 0.463073201 High 0.378604417 High High/I 86.288 6517.6503 1405.8152 7136.694935 1705.472556 819.2509 2634.2069 864.8187 TCGA-55-A494 Null 5 Null IB I Null Null Null Null 30 0.16 0.16 0.457924922 High 0.470949311 High 0.444404013 High High/I 54.545 946.7765 1195.9983 18489.84726 2530.29035 118.846 3439.4373 557.423 TCGA-55-A4DF Null 47 Null IA I Null Null Null Null 30 0.15 0.15 0.213720622 Low 0.252386277 Low 0.224747952 Low Low/I 87.841 993.0652 1797.0411 16589.84373 2988.579508 910.3098 2132.6861 570.9663 TCGA-55-A4DG Null 162 Null IA I Null Null Null Null 30 0.16 0.16 -0.500455282 Low -0.466053798 Low -0.471988869 Low Low/I 14.7679 13877.1097 1746.8354 4603.801682 800.537852 33.2278 549.0506 225.7384 TCGA-55-A57B Null 21 Null IA I Null Null Null Null 30 0.15 0.15 0.069500062 Low 0.118761142 Low 0.037966598 Low Low/I 159.3794 4304.6544 1502.4683 8080.794177 1105.662197 102.6093 912.9055 359.3089 TCGA-62-8394 139 Null Null IIIB II-IV Yes 0.126 Null Null 34 0.15 0.15 -0.083419574 Low -0.052260499 Low -0.058546939 Low Low/II-IV 9.1486 17983.5742 1408.0466 9321.320917 1300.43952 339.7443 1152.3027 478.2202 TCGA-62-8395 Null 705 Null IIB II-IV Null 0.3 Null Null 39 0.15 0.15 0.127336435 Low 0.149481356 Low 0.108386867 Low Low/II-IV 42.1071 5153.2962 1616.7376 15461.96112 2281.523762 52.6339 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5734.9876 2745.4094 5817.586445 677.461156 90.8189 1332.0099 674.4417 TCGA-62-A46Y 414 Null Null IIIA II-IV Yes Null Null Null 30 0.16 0.16 -1.03E-05 Low -0.009586193 Low 0.025255316 Low Low/II-IV 73.6842 4571.4286 2022.5564 15070.01135 302.172553 118.2957 1683.7093 944.8622 TCGA-62-A470 1194 Null Null IB I Null Null Null Null 30 0.16 0.16 Null Null Null Null -0.003788624 Low Low/I 18.4729 4012.3153 1528.3251 24503.02569 5750.047388 179.803 2378.0788 501.2315 TCGA-62-A471 Null 883 Null IIB II-IV Yes Null Null Null 20 0.16 0.16 0.102833065 Low 0.128008217 Low 0.071933785 Low Low/II-IV 6.1381 231.7136 1488.491 19720.65147 3473.691772 332.4808 1335.5499 594.8849 TCGA-62-A472 Null 540 Null IIB II-IV Null Null Null Null 30 0.16 0.16 0.485085959 High 0.534245179 High 0.469493395 High High/II-IV 60.8108 4705.5985 1343.6293 12660.29646 1867.844076 289.5753 1326.2548 559.8456 TCGA-64-1676 Null 1728 Null IA I Null 0.225 47.5 87.5 174 0.15 0.15 -0.09200672 Low -0.067024175 Low 0.026065113 Low Low/I 21.4788 17406.8185 868.1584 1970.308602 934.176607 270.2169 998.4168 437.1971 TCGA-64-1677 628 Null Null IIIA II-IV Yes 0.2 84 92.5 104 0.15 0.15 -0.54260864 Low -0.588915832 Low -0.4818218 Low Low/II-IV 78.7746 11549.2341 2494.5295 4584.04844 1615.689204 397.1554 1400.4376 721.0066 TCGA-64-1679 Null 1686 Null IIIA II-IV Yes 0.2 Null Null 37 0.15 0.15 -0.092161883 Low -0.154339974 Low -0.049966655 Low Low/II-IV 58.6187 3686.303 2134.9391 4800.833624 583.233066 164.8288 1198.7812 617.8178 TCGA-64-1680 Null 1126 Null IV II-IV Null 0.144 77 90 172 0.15 0.15 -0.274778038 Low -0.287423381 Low -0.239394817 Low Low/II-IV 2.9895 25252.6158 2040.3587 6061.527237 2525.00304 76.9806 925.2616 416.293 TCGA-64-1681 1167 Null Null IA I Null 0.128 Null Null 36 0.14 0.14 -0.146697323 Low -0.173483149 Low -0.047754029 Low Low/I 68.6726 8278.6663 1639.1073 5659.351873 640.335965 76.6242 1598.6265 418.1802 TCGA-64-5774 Null 2550 Null IB I Null 0.168 87 80 69 0.15 0.15 -0.177892889 Low -0.194642275 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-0.05943298 Low -0.047436238 Low -0.075755503 Low Low/II-IV 63.887 20305.649 1843.3087 8170.966128 783.755737 180.2286 1213.1809 612.9792 TCGA-69-7979 Null 89 Null IB I Null 0.27 Null Null 40 0.17 0.17 Null Null Null Null -0.52087934 Low Low/I 7.2485 1777.9066 1429.3998 9857.99617 1177.403515 165.5552 1032.4732 228.762 TCGA-69-7980 Null 43 Null I I Null 0.768 Null Null 31 0.15 0.15 0.167136534 Low 0.211386457 Low 0.230835294 Low Low/I 12.8608 1656.5873 2752.8133 16146.67395 2414.360317 188.3182 2243.5888 455.0256 TCGA-69-8253 Null 100 Null IIA II-IV Yes 0.36 Null Null 35 0.14 0.14 -0.140968078 Low -0.137602127 Low -0.218256268 Low Low/II-IV 7.9999 7698.4944 999.7043 6004.680665 1516.282007 21.9998 1198.5594 387.139 TCGA-69-8255 Null 129 Null IA I Null 0.56 Null Null 15 0.14 0.14 -0.141526076 Low -0.126025659 Low -0.067318127 Low Low/I 21.0818 2201.1096 1635.7836 17856.4735 3975.967485 380.5825 1077.3925 1513.7309 TCGA-69-8453 Null 171 Null IIB II-IV Yes 0.072 Null Null 38 0.14 0.14 0.20839841 Low 0.211093543 Low 0.197997594 Low Low/II-IV 48.7329 19313.3528 1298.7329 24185.78943 955.330934 147.6608 959.0643 410.3314 TCGA-69-A59K Null 214 Null IIB II-IV Yes Null Null Null 30 0.15 0.15 0.474942253 High 0.515561404 High 0.46702648 High High/II-IV 6.1501 1588.5609 975.3998 4729.532117 1495.051296 257.0726 2423.7392 551.6605 TCGA-71-6725 Null 61 Null IB I Yes 1.6 Null Null 34 0.14 0.14 -0.226267023 Low -0.176226229 Low -0.132961721 Low Low/I 11.2329 17626.0154 1569.8009 10800.3131 1813.515125 71.7659 1296.7785 316.394 TCGA-71-8520 Null 3 Null IB I Null 0.315 Null Null 29 0.15 0.15 0.082489046 Low 0.089829114 Low 0.120487359 Low Low/I 8.0599 2243.7428 1388.157 9129.682179 928.718885 180.417 1081.2621 347.1942 TCGA-73-4658 1600 1600 Null IB I Null 0.42 40 50 139 0.15 0.15 -0.095269362 Low -0.068998051 Low -0.066575819 Low Low/I 42.0023 5489.0679 1708.8608 3608.102613 739.773015 124.2808 1310.702 478.1358 TCGA-73-4659 711 711 Null IIIA II-IV Yes 0.48 65 85 148 0.15 0.15 0.210108563 Low 0.148673856 Low 0.216767659 Low Low/II-IV 7.384 2927.6371 1458.8608 9113.328638 3351.303597 207.5949 2143.4599 497.8903 TCGA-73-4662 Null 912 Null IA I Null 0.12 75 85 76 0.15 0.15 -0.510678794 Low -0.504296552 Low -0.434683099 Low Low/I 42.6654 2762.4685 2604.9347 7100.032632 1355.063043 81.1112 1966.8288 262.5564 TCGA-73-4666 Null 618 Null IV II-IV Yes 0.126 90 92.5 97 0.16 0.16 0.020613287 Low -0.017920129 Low -0.059044078 Low Low/II-IV 23.8949 2617.8708 1709.363 Null Null 543.7968 1175.1242 1025.4669 TCGA-73-4668 Null 467 Null IIB II-IV Yes 0.018 95 80 58 0.15 0.15 -0.505145145 Low -0.533060353 Low -0.423755987 Low Low/II-IV 8.6101 2195.08 2751.5375 Null Null 146.6175 4831.4883 1462.4846 TCGA-73-4670 Null 14 Null IV II-IV Yes 0.24 92.5 90 144 0.16 0.16 0.124177066 Low 0.053173805 Low 0.12459849 Low Low/II-IV 260.2159 1545.7155 2842.4218 Null Null 685.5269 2061.5006 1078.5841 TCGA-73-4675 Null 40 Null IIIA II-IV Yes 0.704 50 82.5 141 0.16 0.16 0.573347636 High 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622.5506 TCGA-MP-A4T2 1136 Null Null IA I Null Null Null Null 30 0.15 0.15 0.286191929 Low 0.311382203 Low 0.247441539 Low Low/I Null Null Null Null Null Null Null Null TCGA-MP-A4T4 2617 Null Null IIB II-IV Null Null Null Null 30 0.17 0.17 -0.057155253 Low -0.014080949 Low -0.080392126 Low Low/II-IV 34.3161 8479.942 1699.855 3075.63914 593.423627 121.3146 1234.8961 588.2069 TCGA-MP-A4T6 1790 Null Null IIIA II-IV Null Null Null Null 20 0.16 0.16 -0.16534395 Low -0.116808101 Low -0.142140291 Low Low/II-IV 38.0604 1623.7877 1369.0759 14103.33981 2743.718994 51.2351 610.43 213.7237 TCGA-MP-A4T7 167 Null Null IV II-IV Null Null Null Null 30 0.17 0.17 0.239554016 Low 0.239217942 Low 0.207257548 Low Low/II-IV 42.7881 3149.9953 1106.314 17836.86931 5062.397568 171.1522 1163.6588 390.827 TCGA-MP-A4T8 161 Null Null IIIA II-IV Yes Null Null Null 30 0.17 0.17 0.03363203 Low 0.042984468 Low 0.011535027 Low Low/II-IV 49.1339 428.7664 1118.7402 12957.86647 2450.814293 133.1234 1853.2283 460.6824 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