Arraylet_1_Segments Chromosome Genomic_Start Genomic_End Genomic_Length Probe_Start Probe_End Probe_Length CBS_P-value CBS_Segment_Mean Segment_Median Deviation_from_Arraylet_Median(SegMed-TotMedian)/SegMAD Segment_CNA Gain_(Patients) No_CNA_(Patients) Loss_(Patients) Gain_Median_(Months) No_CNA_Median_(Months) Loss_Median_(Months) KM_Median_Difference_(Months) Log-Rank_P-value Segment_1 6p 204009 350724 146716 1 30 30 0 -0.003 -0.002871231 0.051423214 No_CNA 50 154 193 Null 44 40 4 0.74564274 Segment_2 6p 389423 46182785 45793363 31 6632 6602 0 -0.0046 -0.004726328 -1.977290732 Loss 22 370 5 Null 43 34 9 0.545869869 Segment_3 6p 46189105 57358724 11169620 6633 8187 1555 1.80E-158 -0.0023 -0.002354259 0.731814776 No_CNA 13 277 107 Null 45 36 9 0.074549408 Segment_4 6p 57360339 58614002 1253664 8188 8254 67 0 -0.0004 -0.000289843 4.031250325 Gain 21 243 133 50 45 Null 5 0.942537523 Segment_5 12p 198087 9632656 9434570 8255 9854 1600 0 0.0119 0.011950247 19.53448806 Gain 131 206 60 34 49 Null 15 4.33E-06 Segment_6 12p 9663914 12340110 2676197 9855 10220 366 0 0.014 0.014024242 21.57570736 Gain 129 190 78 38 45 Null 7 0.011356645 Segment_7 12p 12341398 16833308 4491911 10221 10937 717 0 0.0105 0.010597921 21.7950631 Gain 127 192 78 36 52 Null 16 1.57E-05 Segment_8 12p 16856408 23897140 7040733 10938 11748 811 4.56E-85 0.0131 0.013102288 18.41641668 Gain 123 195 79 37 44 Null 7 0.009742665 Segment_9 12p 23898794 23970001 71208 11749 11768 20 4.55E-33 0.0159 0.015986215 30.72169487 Gain 127 147 123 37 45 Null 8 0.010178329 Segment_10 12p 23979753 24034968 55216 11769 11785 17 2.31E-19 0.0188 0.018839693 20.85858136 Gain 143 180 74 36 49 Null 13 5.22E-05 Segment_11 12p 24041784 24412067 370284 11786 11908 123 0 0.0163 0.016241205 16.92500276 Gain 140 172 85 37 49 Null 12 0.002532304 Segment_12 12p 24413735 26656948 2243214 11909 12247 339 2.07E-156 0.0209 0.020837552 20.07736105 Gain 145 193 59 36 49 Null 13 0.000859626 Segment_13 12p 26661401 27058745 397345 12248 12340 93 1.85E-51 0.0174 0.017632289 23.84289611 Gain 154 177 66 36 49 Null 13 0.001563731 Segment_14 12p 27062525 27249416 186892 12341 12383 43 1.49E-06 0.0148 0.014885157 26.78845271 Gain 155 182 60 36 50 Null 14 0.005706923 Segment_15 12p 27252271 27261993 9723 12384 12385 2 1.88E-18 0.0106 0.005700074 2.158326517 Gain 91 167 139 38 41 Null 3 0.23797471 Segment_16 12p 27274049 29364366 2090318 12386 12648 263 1.83E-150 0.0122 0.012162553 18.47857805 Gain 131 205 61 36 48 Null 12 0.017035941 Segment_17 12p 29377210 31346238 1969029 12649 12897 249 4.62E-146 0.0103 0.010328328 16.61630811 Gain 119 210 68 36 45 Null 9 0.04871938 Segment_18 12p 31351261 34756150 3404890 12898 13293 396 Null 0.0087 0.008682885 18.93939965 Gain 127 216 54 38 45 Null 7 0.212960283 Segment_1 7p 65558 2473673 2408116 1 187 187 3.74E-15 -0.0257 -0.026447987 -7.522691318 Loss 25 292 80 Null 38 52 14 0.065108242 Segment_2 7p 2480513 5751089 3270577 188 536 349 2.67E-19 -0.0292 -0.029836226 -9.419415144 Loss 13 291 93 Null 38 49 11 0.057205457 Segment_3 7p 5755190 6737202 982013 537 638 102 2.15E-07 -0.0244 -0.024931079 -9.237577302 Loss 21 289 87 Null 39 49 10 0.12918938 Segment_4 7p 6777262 7839209 1061948 639 708 70 3.38E-05 -0.0211 -0.0211117 -9.23867311 Loss 16 287 94 Null 38 50 12 0.004787587 Segment_5 7p 7854632 8571494 716863 709 782 74 2.47E-11 -0.0235 -0.024018783 -10.68369613 Loss 18 293 86 Null 39 49 10 0.038328953 Segment_6 7p 8573058 11759531 3186474 783 1039 257 4.30E-54 -0.0209 -0.0208257 -10.0401177 Loss 11 296 90 Null 40 48 8 0.02946016 Segment_7 7p 11764347 15438118 3673772 1040 1439 400 1.84E-22 -0.0174 -0.017552497 -7.24021581 Loss 13 312 72 Null 41 49 8 0.010856932 Segment_8 7p 15439390 16301960 862571 1440 1512 73 1.94E-17 -0.014 -0.013824709 -6.787284208 Loss 17 309 71 Null 42 45 3 0.110384117 Segment_9 7p 16304367 17838736 1534370 1513 1675 163 1.67E-23 -0.0109 -0.011000981 -5.724932582 Loss 16 317 64 Null 43 42 1 0.39399856 Segment_10 7p 17842304 18538478 696175 1676 1737 62 3.37E-32 -0.0071 -0.00715021 -5.571034175 Loss 20 318 59 Null 41 49 8 0.281017392 Segment_11 7p 18539625 21476273 2936649 1738 2037 300 6.48E-113 -0.0027 -0.002791046 -2.241523574 Loss 18 334 45 Null 42 49 7 0.088299184 Segment_12 7p 21480545 30959046 9478502 2038 3522 1485 0 0.001 0.000970486 -0.597491896 No_CNA 18 367 12 38 44 Null 6 0.158916101 Segment_13 7p 30964143 38287485 7323343 3523 4545 1023 4.88E-12 0.0053 0.005355945 1.196521325 Gain 25 369 3 49 43 Null 6 0.623960373 Segment_14 7p 38315240 38380635 65396 4546 4564 19 1.83E-18 0.001 0.000931051 -0.708548874 No_CNA 280 111 6 42 49 Null 7 0.642209631 Segment_15 7p 38406167 55990578 17584412 4565 6606 2042 1.97E-13 0.0066 0.006577403 1.649410067 Gain 31 360 6 49 44 Null 5 0.519421313 Segment_16 7p 56001698 56299514 297817 6607 6648 42 8.30E-05 0.0034 0.003233543 0.437503332 No_CNA 105 280 12 40 44 Null 4 0.976623304 Segment_17 7p 56360113 57544659 1184547 6649 6697 49 Null 0.0061 0.006153777 1.285433148 Gain 73 299 25 49 44 Null 5 0.657374926 Segment_1 Xq 61931689 62405221 473533 1 7 7 0.085402857 -0.0197 -0.01799424 -4.435505373 Loss 56 245 96 Null 38 52 14 0.16398323 Segment_2 Xq 62473920 64202801 1728882 8 62 55 0.000231481 -0.0219 -0.022253353 -12.51552683 Loss 58 303 36 Null 44 44 0 0.882398509 Segment_3 Xq 64230106 64779227 549122 63 82 20 4.99E-05 -0.0247 -0.024737884 -12.08356042 Loss 63 292 42 Null 44 48 4 0.452311032 Segment_4 Xq 64800710 65250626 449917 83 113 31 0.006063428 -0.0218 -0.022182105 -15.40452032 Loss 64 294 39 Null 44 48 4 0.459231537 Segment_5 Xq 65257725 73206383 7948659 114 516 403 5.39E-08 -0.02 -0.019987807 -7.190531522 Loss 41 321 35 Null 41 59 18 0.39171027 Segment_6 Xq 73213827 74007608 793782 517 565 49 7.83E-09 -0.0175 -0.017787406 -7.545344441 Loss 34 318 45 Null 42 48 6 0.323552511 Segment_7 Xq 74041095 76708018 2666924 566 656 91 5.34E-17 -0.0147 -0.014850888 -4.662144498 Loss 31 325 41 Null 41 69 28 0.320978159 Segment_8 Xq 76710208 80499632 3789425 657 791 135 3.86E-39 -0.0121 -0.012200504 -5.831691075 Loss 27 331 39 Null 42 69 27 0.559743231 Segment_9 Xq 80512192 89299442 8787251 792 1056 265 1.21E-06 -0.0094 -0.009373751 -3.49208028 Loss 22 331 44 Null 44 69 25 0.485224665 Segment_10 Xq 89330088 90979291 1649204 1057 1070 14 9.68E-18 -0.0064 -0.006231656 -1.992954156 Loss 19 273 105 Null 39 58 19 0.032636533 Segment_11 Xq 91428554 93916886 2488333 1071 1127 57 2.79E-05 -0.0124 -0.012459636 -5.091841119 Loss 16 338 43 Null 44 43 1 0.48816481 Segment_12 Xq 93964861 94638543 673683 1128 1141 14 1.22E-10 -0.0092 -0.009002647 -3.298638011 Loss 21 319 57 Null 44 42 2 0.896499927 Segment_13 Xq 94714902 106097418 11382517 1142 1744 603 1.46E-24 -0.0065 -0.006534473 -1.704914828 Loss 11 362 24 Null 44 34 10 0.791705125 Segment_14 Xq 106109219 107580622 1471404 1745 1847 103 2.54E-05 -0.0088 -0.008944764 -2.898600207 Loss 16 357 24 Null 44 43 1 0.487364259 Segment_15 Xq 107586740 107977711 390972 1848 1875 28 7.56E-13 -0.0071 -0.006770709 -2.323037667 Loss 23 343 31 Null 44 43 1 0.826793399 Segment_16 Xq 107984064 111907840 3923777 1876 2081 206 3.72E-71 -0.0042 -0.004158431 -0.799631644 No_CNA 11 364 22 Null 44 43 1 0.513431029 Segment_17 Xq 111936510 118841218 6904709 2082 2378 297 5.52E-139 -0.0012 -0.001244311 0.851175558 No_CNA 10 369 18 Null 42 45 3 0.03504581 Segment_18 Xq 118863956 125307775 6443820 2379 2668 290 1.57E-08 0.003 0.002958331 2.91917724 Gain 28 359 10 34 44 Null 10 0.946946525 Segment_19 Xq 125315597 125801794 486198 2669 2689 21 1.49E-05 0.0061 0.0058379 3.447332517 Gain 38 325 34 69 44 Null 25 0.152756104 Segment_20 Xq 125829346 130550206 4720861 2690 2889 200 1.00E-52 0.0085 0.008567937 5.790229476 Gain 43 335 19 69 44 Null 25 0.735555009 Segment_21 Xq 130608952 132785125 2176174 2890 3019 130 1.76E-25 0.012 0.012243976 8.952515268 Gain 55 323 19 69 41 Null 28 0.064825761 Segment_22 Xq 132796480 136470785 3674306 3020 3266 247 1.68E-49 0.0147 0.014612806 8.003387509 Gain 57 322 18 69 41 Null 28 0.180494905 Segment_23 Xq 136495198 139909320 3414123 3267 3414 148 5.75E-21 0.0186 0.018554627 10.55304288 Gain 57 320 20 64 40 Null 24 0.154673452 Segment_24 Xq 139934474 143456100 3521627 3415 3533 119 3.87E-40 0.0218 0.022185789 9.488500841 Gain 56 313 28 64 42 Null 22 0.10861898 Segment_25 Xq 143621867 154908412 11286546 3534 4137 604 Null 0.0268 0.027297188 11.66687719 Gain 61 313 23 60 42 Null 18 0.25062518